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Home » All posts » Desserts

Healthy Thumbprint Cookies

Updated: May 2, 2023 · Published: Apr 13, 2023 by Laura Yautz · This post may contain affiliate links · 2 Comments

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Cookies that are easy and healthy, with a delicious nutty flavor complemented by sweet jam. These Healthy Thumbprint Cookies are low sugar and low fat, and free of dairy and eggs.

They're made with a combination of whole wheat pastry flour and almond flour to keep the cookie moist and light with tons of flavor!

Three cookies on a wooden platter.

In addition to being heart healthy, these thumbprint cookies are vegan, as we're not using eggs, milk, butter, or any other animal products.

These healthy cookies are great for Christmas, Easter, or really just because. They are low fat, low sugar, and low sodium, making them a perfect end to any meal.

You may wish to learn more about how to cook with less salt.

Jump to:
  • Ingredients
  • Instructions
  • Substitutions
  • Variations
  • Storage
  • Top tip
  • FAQ
  • Related
  • Pairing
  • 📖 Recipe

Ingredients

The base of our thumbprint cookies is a blend of almond flour and whole wheat pastry flour. Do not try to substitute whole wheat flour. Your cookies will turn out very dense.

Ingredients for thumbprint cookies.
  • Whole wheat pastry flour
  • Almond flour
  • Salt
  • Unsweetened applesauce
  • 100% pure maple syrup
  • Grapeseed oil
  • Vanilla extract
  • No added sugar fruit jam

See recipe card for quantities.

Instructions

These healthy thumbprint cookies are prepared almost the same as regular thumbprint cookies.

Dry cookie ingredients in a bowl.

Combine all the dry ingredients in a large bowl and mix.

Wet cookie ingredients in a bowl.

In a separate bowl, combine all the wet ingredient and mix.

Wet and dry cookie ingredients, combined, in a bowl.

Pour the wet ingredients into the dry ingredients.

Cookie dough in a bowl.

Mix well, until a thick dough forms.

Cookie dough formed into balls on a cookie sheet.

Form balls with one tablespoon of dough each.

Unbaked cookies on a cookie sheet, showing using a teaspoon to make indentations in thumbprint cookies.

Use a the back of a teaspoon (or your thumb) to press wells into the balls of dough, being careful they don't crack apart.

Unbaked cookies filled with jam.

Fill each well with jam.

Baked cookies on a cookie sheet.

Bake until the cookies just start to brown and no more.

Hint: if the dough cracks apart too much when you are forming the indentation, the jam will leak out as it bakes. Make sure to firmly press the dough together as you roll the balls.

Substitutions

Try some of these substitutions if you need a modification:

  • Flour - to make these gluten free, use an all purpose gluten free flour instead of the whole wheat pastry flour. It will no longer be whole grain unless your gluten free flour is whole grain.
  • Oil - use sunflower, peanut or canola oil instead of grapeseed. A neutral oil will be best, which is why I'm not recommending olive oil for this particular recipe.
  • Sweetener - use either white or brown sugar in place of maple syrup. Honey does not work well in this recipe.
  • Nut free - to make this nut free, use ½ cup finely ground sunflower seeds instead of almond flour, or simply use an extra ½ cup whole wheat pastry flour.

Variations

Here are several ideas on how to mix up this recipe for a little variety!

  • Walnuts - use finely ground walnuts (or any finely ground nut) in place of almond flour
  • Jam - I use strawberry jam, but blueberry, cherry, or even orange marmalade would work great (learn more about choosing a healthy jelly)
  • Applesauce - try a flavored unsweetened applesauce for extra flavor, like strawberry or blueberry. You can even use a mashed banana instead if you like.

You might also really like these Peanut Butter and Jelly Dessert Bars.

Storage

Almond flour thumbprint cookies will store great in an airtight container at room temperature for about 5 days. You might get a few more days out of them if it's not hot and humid.

These can be frozen for up to six months. Thaw at room temperature for an hour or two.

Top tip

Absolutely use whole wheat pastry flour for this and other baked goods. If you try to use regular whole wheat flour, your cookies will be hard and dense.

FAQ

Can I use all almond flour for these?

No. This particular recipe will not turn out if you use all almond flour.

Why are my cookies cracking so much when I put the thumbprint in them?

This can happen for two reasons. Either the dough it too dry, or you are trying to indent them too fast or too deeply.

Try pressing down more slowly, and not as deep first. If that doesn't work, you can try remixing the dough with a few teaspoons of water and trying again.

Related

Looking for other recipes like this? Try these:

You must use the category name, not a URL, in the category field.

Pairing

These are my favorite dishes to serve with Healthy Thumbprint Cookies:

  • Pink beverage in a glass.
    Hibiscus Rose Cooler
  • Overhead image of a casserole in a casserole dish, with a bowl of steamed broccoli nearby.
    Italian Lentil & Rice Pantry Casserole
  • Baking pan of lasagna rolls.
    Zucchini Lasagna Rolls (dairy free)
  • Stuffed honeynut squash halves on a baking pan.
    Roasted Honeynut Squash Stuffed with Cranberry Wild Rice Pilaf

📖 Recipe

Overhead image of three thumbprint cookies on a platter with strawberry jam in them

Healthy Thumbprint Cookies

Laura Yautz
Thumbprint cookies that are easy and healthy, with a delicious nutty flavor complemented by sweet jam.
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Prep Time 15 minutes mins
Cook Time 15 minutes mins
Total Time 30 minutes mins
Course Dessert
Cuisine American
Servings 18 cookies
Calories 91 kcal

Ingredients
  

  • 1 ½ cup Whole Wheat Pastry Flour
  • ½ cup Almond Flour
  • ⅛ teaspoon Salt
  • ¼ cup Unsweetened Applesauce
  • ¼ cup 100% Pure Maple Syrup
  • 2 tablespoon Grapeseed Oil
  • 1 teaspoon Vanilla Extract
  • ⅓ cup No Added Sugar Fruit Jam

Instructions
 

  • Preheat oven to 350° F.
  • In a large bowl, mix together the whole wheat pastry flour, almond flour, and salt.
  • In a separate bowl, mix the applesauce, maple syrup, oil, and vanilla.
  • Pour the wet mixture into the dry ingredients, and mix thoroughly.
  • Measure out the dough, 1 tablespoon at a time, and roll it into a ball.
  • Place the balls on a lined baking sheet, about 2 inches apart. You will probably need two baking sheets, or will have to do two batches.
  • Now use the back of a teaspoon (or your thumb) to gently press a hole into each ball. It's ok if they crack a little.
  • Fill each hole with no added sugar jam.
  • Bake 12-15 minutes, until the cookies are just starting to brown.
  • Cool on the baking sheet for 5 minutes before moving to a cooling rack to cool completely.

Nutrition

Serving: 1cookieCalories: 91kcal (5%)Carbohydrates: 14g (5%)Protein: 2g (4%)Fat: 3g (5%)Saturated Fat: 0.3g (2%)Polyunsaturated Fat: 1.4gMonounsaturated Fat: 1.2gSodium: 17mg (1%)Potassium: 53mg (2%)Fiber: 2g (8%)Sugar: 5.6g (6%)Calcium: 13.75mg (1%)Iron: 0.42mg (2%)

*Nutrition information is an estimate, and will change based on the brand and individual ingredients and amounts you use. This is provided for your convenience only.

Keyword healthy cookies
Tried this recipe?Let us know how it was!
Two cookies on a wooden platter, sprinkled with powdered sugar. Text overlay: Almond flour thumbprint cookies; low sugar, dairy and egg free.

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Comments

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    Recipe Rating




  1. Jean says

    November 28, 2024 at 4:41 pm

    What could I use instead of the grapeseed oil?

    Reply
    • Laura Yautz says

      December 04, 2024 at 2:09 pm

      Hi Jean, you can use any oil you like, but I recommend one more neutral in flavor, like avocado or canola oil. Olive oil would work, but you may taste it - you may or may not enjoy that in a cookie 🙂 Hope this helps! Happy baking!

      Reply
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Hi, I'm Laura!

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